Understand ecosystem regime shifts by modelling ecosystem development using Boolean networks


I’m very glad to co-author this paper with colleagues from the French Institute of Pondicherry. Along with the Aoupinié paper, this closes my Indian file :-)

Gaucherel C, Théro H, Puiseux A, Bonhomme V. (2017). Understand ecosystem regime shifts by modelling ecosystem development using Boolean networks. Ecological Complexity 31: 104–114

You can read the paper there. Please contact me if you want a copy. The abstract follows.


Complex ecosystems are difficult to model and are still poorly understood. In spite of the long lasting efforts to predict them, we still lack a real integrated framework to grasp their behaviours. In this paper, the concept of ecosystem development is proposed to understand the sharp regime shifts they cumulate over the long term. To handle regime shifts, we develop an integrated model merging the physical, biological and social components and interactions (processes) of an ecosystem into a single graph representation. We then formalize sharp structural (topological) changes of the system with Boolean networks. We illustrate this theoretical approach borrowed from discrete model formalisms on some ecosystems assumed to be representative of most ecosystems: the eusocial (termite and ant) insect colonies and their associated interactions.

Boolean networks, combined with rigorous production/rewriting rules and syntax, simulate the ecosystem’s responses to strong perturbations. This deterministic and qualitative approach allows identifying fragile components, analysing ecosystem resilience to perturbations and to map out every lethal trajectory of the ecosystem. In our models, termite colonies appear to be almost six times less vulnerable to perturbations than ant colonies, and need (8%) more time steps to collapse. This robust result was partly due to the higher number of essential nodes in ant ecosystems, and partly due to interactions related to the ants’ vertebrate predators. The rigorous and parsimonious abilities of such discrete models pave the way in reinterpreting and managing a wide range of ecosystems.

Vincent Bonhomme

Vincent Bonhomme

The opposite of play is not work, it's depression


rss facebook stack overflow twitter github youtube mail spotify instagram linkedin